Nomenclature of NAGNAG alternative splicing: NAGNAG splicing results in two possible splice variants - splicing after the first AG results in the E (exonic, also known as proximal) isoform, whereas splicing after the second AG results in the I (intronic, also known as distal) isoform - accordingly, we refer to constitutively spliced NAGNAG acceptors as the E- or I-class, and to usage of both acceptors, or AS, as the EI-class.

Features used for prediction of NAGNAG splicing

Two predictions are provided :

• Prediction using the 14-feature Bayesian network [1] :

  U3

  intron length

  p-16

  p-15

  p-11

  p-9

  p-7

  p-6

  p-5

  p-2

  p-1

  N1

  N2

  D1

  Nomenclature of sequence features used to analyze NAGNAG splicing.

• Prediction using MaxEntScan scores [2]

References

Training and test data for WEKA/BioBayesNet used in this work