Bayesian network prediction of splicing outcome at NAGNAG tandem acceptors
||Nomenclature of NAGNAG alternative splicing: NAGNAG splicing results in two possible splice variants - splicing after the first AG results in the E (exonic, also known as proximal) isoform, whereas splicing after the second AG results in the I (intronic, also known as distal) isoform - accordingly, we refer to constitutively spliced NAGNAG acceptors as the E- or I-class, and to usage of both acceptors, or AS, as the EI-class.
Features used for prediction of NAGNAG splicing
Two predictions are provided :
- Prediction using the 14-feature Bayesian network  :
||Nomenclature of sequence features used to analyze NAGNAG splicing.
- Prediction using MaxEntScan scores 
|Accurate prediction of NAGNAG alternative splicing
|Sinha R, Nikolajewa S, Szafranski K, Hiller M, Jahn N, Huse K, Platzer M,Backofen R: Accurate prediction of NAGNAG alternative splicing. Nucl Acids Res 2009, 37(11):3569-3579.
|Ian H. Witten and Eibe Frank (2005) 'Data Mining: Practical machine learning tools and techniques', 2nd Edition, Morgan Kaufmann, San Francisco, 2005